Tag: google

  • Weekly Science Picks

    Weekly Science Picks

    DNA
    DNA

    This edition of weekly science picks is going to be a little different… it’s a smorgasbord of intriguing facts ranging from corporate ownership of our DNA to recycling building materials. Let’s get started.

    This first story represents the line between scientific research and corporate profits that sometimes leaves the ethical, human components as an afterthought. Hopefully on Monday, 15 April, the US Supreme Court rectifies this when they hear oral arguments on a case concerning the patent of human genes.

    The Supreme Court should invalidate the patent on human DNA by Jeffrey A. Rosenfeld and Christopher E. Mason

    Today, Salk would be shocked to find that your DNA belongs not to you but rather to many companies and institutions that have patents on the DNA from your cells. Forty-one percent of the genes in your genome are not legally yours, according to a long list of gene patents that have been granted since the 1980s. These patents cover thousands of human genes and restrict a doctor’s ability to look at your DNA and plan your medical treatment. These patent claims contradict an intuitive sense that your DNA is no less yours than your lungs or kidneys.

     

    As if Google wasn’t involved in our daily lives enough, they want to be their in death too. Don’t get me wrong, Google is great, I use their products every day. Although this story is a little creepy to think about, where to store or what happens with all that data we create while alive and breathing, is important.

    Google Lets You Manage Your Digital Life From Beyond the Grave by Roberto Baldwin

    Google announced today that users of its myriad digital services can control how their data is handled while they’re taking a dirt nap.

     

    If you’re fascinated by buildings and building materials, you’ll enjoy this next story I came across on Arup’s website. Arup is a design, planning, and engineering firm with offices around the globe. (They designed and engineered the Sydney Opera House.)

    Resources / The hidden assets of building by Mark Bowers

    Take glass, for example. Glass from buildings is not widely recycled because it’s not as straightforward as taking empty bottles to the bottle bank. There are issues such as contamination from silicone sealants to consider, for example. But when Arup worked on refurbishing the Lloyd’s of London building, we showed it could be done.

     

    And the last pick for this week is an update on another legal case soon to be heard in The Hague. The UN Court will hear oral arguments from representatives of both Australia and Japan over the Japanese whale research programme in Antarctica. The case is scheduled for 26 June to 16 July.

    Australia to face Japan over whaling in UN Court by BBC News

    “Australia will now have its day in court to establish, once and for all, that Japan’s whaling hunt is not for scientific purposes and is against international law,” Australia’s attorney-general, Mark Dreyfus, said.

  • Weekly Science Picks

    Weekly Science Picks

    datatunnelI’ve just returned from a fantastic holiday in Australia (sad I had to leave). The great thing about travel is that it opens your mind and exposes your senses – elevates it to a higher level of thinking, thinking that is clear and uninterrupted. The not so great thing about travelling to far away places is the resulting jet lag…that can lead to not so clear and uninterrupted bouts of thinking at 3AM. What follows is a hodgepodge of the collection of science stories I encountered over the past week.

    This first article opens up a much-needed debate on the policy of biodiversity and species preservation. Whether it is rhinos, right whales, snow leopards, I think it’s time we had a conversation on how present day society moves forward with species interaction.

    Rhino poaching in South Africa reaches record levels by Matt McGrath

    “Rhinos are being illegally killed, their horns hacked off and the animals left to bleed to death,” says Traffic’s director of advocacy Sabri Zain, “all for the frivolous use of their horns as a hangover cure.”

     

    While in Brisbane, I had the great pleasure to meet with the director of Australian Science, Dan Petrovic. We had an hour-long conversation about artificial intelligence. I’m not sure how much interaction I want with my search engine in the future, but the beauty of his story is in the intricate details and the possibilities that may soon be reality. This story technically wasn’t from last week, but that is when I read it. So if you haven’t given it a read, sit yourself down with a cup of coffee or tea and do so. We would love to host a Google+ hangout and get some reader feedback on this topic.

    Conversations with Google by Dan Petrovic

    This article explores the future of human-computer interaction and proposes how search engines will learn and interact with their users in the future.

     

    I love science. How did I not know about io9? No idea. But thank goodness I have added it to my weekly reading list. (Thanks Dan!) This next story is about humour more than anything. And in science, a sense of humour is an important character trait to have. The U.S. may not be building a Death Star, but kudos to them for the response and taking the opportunity to highlight STEM. My nieces in Ohio are hard at work on building the Lego Death Star they received from Santa. So in a way, the U.S. is getting a Death Star and two aspiring scientists. Maybe thousands!

    The White House will not build a Death Star, tells us in hilariously geeky fashion by Lauren Davis

    If you do pursue a career in a science, technology, engineering or math-related field, the Force will be with us! Remember, the Death Star’s power to destroy a planet, or even a whole star system, is insignificant next to the power of the Force. –  Response from Paul Shawcross, Chief of the Science and Space Branch at the White House Office of Management and Budget

     

    Apparently Shell experienced an incident with its Arctic drilling on New Year’s Eve, with no catastrophic consequences. Arctic drilling seems like a horror movie. You’re sitting on the couch watching TV, the music is loudening, suspense is growing, you know something bad is about to happen at any second…

    An energy analyst from the Brookings Institution mentions in the article that oil and gas companies don’t have a choice when it comes to Arctic exploration and drilling. In order to remain competitive, they have to go up there.

    In Kulluk’s Wake, Deeper Debate Roils on Arctic Drilling by Traci Watson

    Fortunately for the energy industry, the Arctic has become more hospitable to drilling just as other locations have become more hostile. The Arctic sea ice melted away to a record low in 2012, according to the U.S. National Oceanic and Atmospheric Administration, spelling easier access for drill ships, though melting ice also brings new problems.

    Fortunate. Back to the drawing board. So many plans and policies, so little time.

    As always, stay thirsty for knowledge.

  • Predicting the next epidemic

    Predicting the next epidemic

    In some parts of this world the rains predict disease, and a hot, dry, dusty wind is the harbinger of a meningitis outbreak that is yet to come. Now, from where you sit, Google will soon predict the next great epidemic.

    At this time of year, ever since that 2009 paper was published on flu trends, seasonal influenza and how we predict it, is a recurring topic.

    It seems we are always moments away from the next great flu epidemic. This year saw a novel coronavirus make the rounds. A virus that usually causes nothing more serious and common than a cold, was the source of severe respiratory illnesses in the Middle East, with reported cases coming from Qatar, Saudi Arabia and Jordan, and resulting in 5 fatalities.

    The curious case of the novel coronavirus is a new strain of virus that has not been previously identified in humans. The hypothesis is that it jumped the species barrier, but, as of yet, a definitive origin has not been identified.

    When a disease will decide to jump the species barrier is hard to predict. Some of the most serious afflictions of humans in recent times have had their origin in animal diseases. HIV/AIDS and ebola being the prime example. Seasonal influenza is another — causing tens of millions of respiratory illnesses and up to half a million deaths worldwide each year.

    In mankind’s eternal struggle against disease, as the adage goes, prevention is better than a cure. But how do we prevent disease? How do we mitigate for an oncoming plague or pestilence? A part of this prevention is predicting it.

    Currently, we can only really predict an epidemic when it is currently in motion. Hospitalizations are the only way we can really track a disease. When it is possibly already too late. When people are already sick.

    In the week the world was supposed to end, the European Centre for Disease Control (ECDC) released its weekly report on influenza surveillance, like it had done since week 40 of this year. The report aggregates data on influenza-like illnesses reported in primary health care facilities, as well as virological and clinical data.

    Flu surveillance, in Europe and similarly in the US, is based on nationally organised sentinel networks of physicians, mostly general practitioners (the first person you go see when you’re ill), covering at least 1 to 5% of the population in their countries. Each sentinel physician reports the weekly number of patients seen with influenza-like illnesses and acute respiratory illnesses.

    The report is essentially there to tell us when a flu epidemic is going to break out. In week 49, ECDC announced that the season of influenza transmission had begun.

    Along with the direct methods of detecting and monitoring disease, in recent years new and innovative non-direct methods have been tested. From sales of over-the-counter medication to online activity. The idea is to try and record health-seeking behaviour… ie before the disease has taken hold in a population.

    Emergency hospital during flu epidemic
    Emergency hospital during influenza epidemic, Camp Funston, Kansas.

    Monitoring disease, 140 characters at a time…

    Flu is a disease very amenable to being searched and turning up in social media. Health-seeking behaviour — in this day and age, we google every ailment. However, diseases which are more serious probably won’t follow this social pattern.

    The concept is essentially trying to “predict the present

  • Networking the Solar System

    Networking the Solar System

    When the human race inevitably expands off planet Earth, we’ll naturally want to take our internet with us – over the past 15 years or so, the internet really has become an integral part of our lives! In fact, even as you’re reading this, 300 gigawatts of electricity worldwide will have been used to transfer 640 terabytes of information across the internet to 1.5 billion desktop computers and a further billion mobile devices. In the time you’ve taken to read this paragraph, over 200 million e-mails have been sent, 6 million Facebook pages have been loaded, 1.3 million YouTube videos have been watched, and 100,000 people have posted an update to their twitter accounts.

    Astronaut Tracy Caldwell Dyson enjoying a view from the ISS Cupola window.

    Inspite of its sprawling extent on our planet though, the internet’s first step off-world was able to fit inside just 1120 bytes. On January 22, back in 2010, astronaut TJ Creamer made a small but important piece of internet history by being the first human being ever to post to a twitter feed from orbit. Astronauts had been updating twitter feeds while in orbit for some time, but they had previously always relayed their messages via NASA back here on Earth. Since 2010, however, the International Space Station (ISS) has been upgraded to have its own internet connection. Intended for personal use by astronauts and still routed through ground based systems at NASA for security, this is how e-mails, blog posts and twitter updates are sent back home. All the same, even though it might seem a long way away, the ISS is relatively nearby in low Earth orbit.

    Things start to become more complicated when you consider travelling further afield, because whether we like it or not, we can’t cheat special relativity. The speed of light is the fastest any interplanetary communication (or anything, for that matter) can travel. The Moon is still close enough that interaction is possible in almost real time. Sending a message to someone on the Moon would involve a delay of a little under three seconds. Good enough to hold a conversation, but with gamers here on Earth complaining about latencies higher than 600 milliseconds, you’re obviously not going to be able to play Halo or Warcraft against a friend over that kind of distance. Travel as far as Mars and the problem becomes even more pronounced, with delays of anywhere between 3 and 22 minutes, depending on exactly where Mars is in relation to Earth. Minutes turn to hours as you continue to travel outwards (transmissions from Voyager 2 currently take over 13 hours to reach us). All things considered, using an interplanetary internet sounds like a rather good idea for communication over distances like these. While phonecalls to Mars would be essentially impossible, delays between responses to e-mails and tweets are fairly routine. You could quite easily have a twitter conversation with someone over on a neighbouring planet.

    Preparing for the future, NASA and Google teamed up a few years ago to develop a new internet protocol designed to be used in space. Called Disruption-Tolerant Networking (DTN), it’s designed to work a bit differently to the internet we’re all familiar with. While our familiar TCP/IP systems rely on a constant connection to transfer data, this is obviously unfeasible in deep space. While a DTN network would still operate using a series of nodes passing information from machine to machine, the way ground-based networks do, each node needs to hold onto the data being transmitted until it has a confirmation that the message has been safely passed on.

    SpaceX believe it should be possible to send people to Mars within 20 years.

    With a steadily accumulating collection of spacecraft in various parts of the solar system. Google’s Vint Cerf has expressed plans to use these old pieces of hardware, many of which have long since completed their original missions, as nodes in what will become an interplanetary internet. Indeed, spacecraft have already transmitted data amongst themselves en route back to Earth. ESA’s Mars Express probe, for instance, has served as a relay between Earth and vehicles landing on Mars, and is set to do so again when NASA’s Curiosity rover arrives at the red planet later this year. In an interview with networkworld.com last year, Cerf is quoted as  saying “…if they are still functionally operable — they have power, computer, communications — they can become nodes in an interplanetary backbone. So what can happen over time, is that we can literally grow an interplanetary network that can support both man and robotic exploration.” He continued to explain how, while all space missions to date have involved point-to-point communications, future space missions will likely require “a richer communications network.” This also has an added plus that an interplanetary network infrastructure will allow scientists to receive more data from deep space missions than is currently possible.

    With many astronauts already maintaining active twitter feeds from orbit, it has to be said that similar social networks may well play an important role in communications in the future. By the time that role is needed, a network infrastructure will likely be in place for it to operate on. A company like Google, processing petabytes of data and serving hundreds of millions of queries for an index containing billions of websites every day, is certainly qualified to help set up a computer network on interplanetary scales. Maybe in the future when people talk about Google Mars, they might mean it literally!

    Image credits: NASA/Tracy Caldwell Dyson (top), SpaceX (bottom)

  • Measuring Network Performance with M-Lab

    Measuring Network Performance with M-Lab

    Measurement Lab is an open platform for researchers to deploy Internet measurement tools. By enhancing Internet transparency, M-Lab helps sustain a healthy, innovative Internet. What this explanatory video to learn why M-Lab is important to researchers, network engineers and policy makers. M-Lab is a collaborative effort founded in 2009 by Googler Vint Cerf and a number of network researchers and industry partners, including Google.

    M-Lab’s goal is to provide researchers, consumers, policymakers, and anyone else who wants good, intelligible information about the Internet,  with open data about network performance.

    The nuts and bolts of M-Lab start with a widely-distributed server platform maintained and managed by the M-Lab Collaborative. These servers are purpose-built to support broadband measurement, and are consistently deployed to exact specifications. This means that the data they collect is consistent — important when you’re contrasting global network performance. Researchers host open-source, active broadband measurement tools on these servers, and users access these tools, run tests, and get real-time information on their network performance. Each time a user runs a test (about 200,000 times a day), data is collected and put into the public domain. So far, it’s 516 terabytes and growing.


    M-Lab is a head-to-tail solution for high quality, open data. And the best part is that it’s all open. From the testing methodology described in the open source code of the tools, to the server documentation, to the data collected, scientists and others can vet exactly what is being measured, how it’s measured, and what precisely this says about networks and performance. M-Lab’s momentum is generated by working together from a shared source of data to progress the state of networks.

     Source.

  • Google Gets an Upgrade

    Google Gets an Upgrade

    According to Google’s Grzegorz Czajkowski, many of the things people are involved in can be represented in the form of graph, including professional activities and personal relationships. The company was the first to use advanced graph analysis methods like PageRank to get more from the Web.

    Using graphs in a dynamic environment like the society brings a new angle to computational power and scalability. Google applies the Bulk Synchronous Parallel Model in its scalable graph analysis by using a framework known as Pregel. Pregel simplifies the calculation of PageRank and scales clusters autonomously without requiring programmers to intervene manually. As a result, the software engineers have more time to concentrate on the algorithm itself.

    The Basics of PageRank

    PageRank uses the random suffer model that assumes that Web surfers use a linear method when following links until their interests stop or they stop browsing. All the clicks away from the source documents reduce the PageRank. Of course, the actual process is more complex, with the typical value of PageRank dampening being 0.15.

    The entire Web can be treated like a graph, where all the pages and index-able files are regarded as ‘vertices’ and the links as ‘edges.’
    The vertices are usually initialised with starting values that, interestingly, make no major influence on the end-result. Pregel runs
    through a series of super-steps after initialisation by updating values and sending messages to other vertices.

    Related Frameworks and Methodologies

    According to Bill Slawski of SEO by the Sea, there’s more behind Pregel and Google, which uses other techniques like FlumeJava and Dremel. The company uses Pregel because it is ‘expressive’ and easy to program.
    Software engineers have designed their own frameworks and toolkits, especially when dealing with multi-step graph operations.

    Characteristics and Benefits of Dremel

    Nested data

    Interactive speed

    Trillion-record, multi-terabyte datasets

    Columnar processing and storage

    Aggregation tree architecture

    Spam analysis

    Analysing crawled Web documents

    In situ data access

    Crash reporting for Google Products

    OCR results from Google Books

    Tracking the install of Android Market apps

    Resource monitoring for work run in Google’s data centres

    Debugging map tiles on Google Maps

    FlumeJava

    Google users started using FlumeJava in May 2009. It is simpler than MapReduce and can control executor and optimizer if necessary. Hundreds of people use pipelines with processing capacities ranging from gigabytes to petabytes every month.
    Google employs interchangeable tools and systems that multiple groups can use.

     

    References:

    http://arxiv.org/abs/1201.2261
    http://arxiv.org/ftp/arxiv/papers/1201/1201.2261.pdf
    http://arxiv.org/a/petrovic_d_1